Index

A

add_derived() (mesh.patch.CellCenterData2d method) (mesh.patch.FaceCenterData2d method) add_ivars() (mesh.patch.CellCenterData2d method) advection module advection.advective_fluxes module advection.problems module advection.problems.smooth module advection.problems.test module advection.problems.tophat module advection.simulation module advection_fv4 module advection_fv4.fluxes module advection_fv4.interface module advection_fv4.problems module advection_fv4.problems.smooth module advection_fv4.simulation module advection_nonuniform module

advection_nonuniform.advective_fluxes module advection_nonuniform.problems module advection_nonuniform.problems.slotted module advection_nonuniform.simulation module advection_rk module advection_rk.fluxes module advection_rk.simulation module advection_weno module advection_weno.fluxes module advection_weno.simulation module alpha() (in module examples.multigrid.mg_test_general_alphabeta_only) (in module examples.multigrid.mg_test_general_beta_only) (in module examples.multigrid.mg_test_general_constant) (in module examples.multigrid.mg_test_general_dirichlet) (in module examples.multigrid.mg_test_general_inhomogeneous) (in module examples.multigrid.mg_test_vc_constant) (in module examples.multigrid.mg_test_vc_dirichlet) (in module examples.multigrid.mg_test_vc_periodic) array_generate_particles() (particles.particles.Particles method) ArrayIndexer (class in mesh.array_indexer) artificial_viscosity() (in module compressible.interface)

B

Basestate (class in lm_atm.simulation) BC (class in mesh.boundary) bc_is_solid() (in module mesh.boundary) bc_setup() (in module simulation_null) BCProp (class in mesh.boundary) begin() (util.profile.Timer method)

beta() (in module examples.multigrid.mg_test_general_alphabeta_only) (in module examples.multigrid.mg_test_general_beta_only) (in module examples.multigrid.mg_test_general_constant) (in module examples.multigrid.mg_test_general_dirichlet) (in module examples.multigrid.mg_test_general_inhomogeneous) bold() (in module util.msg) burn() (compressible_react.simulation.Simulation method)

C

cell_center_data_clone() (in module mesh.patch) CellCenterData2d (class in mesh.patch) CellCenterMG2d (class in multigrid.MG) coarse_like() (mesh.patch.Grid2d method) command_line_params() (util.runparams.RuntimeParameters method) compare module compare() (in module compare) compare_to_benchmark() (pyro.PyroBenchmark method) compressible module compressible.BC module compressible.derives module compressible.eos module compressible.interface module compressible.problems module compressible.problems.acoustic_pulse module compressible.problems.advect module compressible.problems.bubble module compressible.problems.hse module compressible.problems.kh module compressible.problems.logo module compressible.problems.quad module compressible.problems.ramp module compressible.problems.rt module compressible.problems.rt2 module compressible.problems.sedov module compressible.problems.sod module

compressible.problems.test module compressible.simulation module compressible.unsplit_fluxes module compressible_fv4 module compressible_fv4.fluxes module compressible_fv4.problems module compressible_fv4.problems.acoustic_pulse module compressible_fv4.simulation module compressible_react module compressible_react.problems module compressible_react.problems.flame module compressible_react.problems.rt module compressible_react.simulation module compressible_rk module compressible_rk.fluxes module compressible_rk.simulation module compressible_sdc module compressible_sdc.simulation module compute_final_update() (mesh.integration.RKIntegrator method) compute_timestep() (simulation_null.NullSimulation method) cons_to_prim() (in module compressible.simulation) (in module swe.simulation) consFlux() (in module compressible.interface) (in module swe.interface) copy() (mesh.array_indexer.ArrayIndexer method) create() (mesh.patch.CellCenterData2d method) (mesh.patch.FaceCenterData2d method)

D

define_bc() (in module mesh.boundary) dens() (in module compressible.eos) derive_primitives() (in module compressible.derives) (in module swe.derives) diffuse() (compressible_react.simulation.Simulation method) diffusion module diffusion.problems module diffusion.problems.gaussian module diffusion.problems.test module diffusion.simulation module

do_demo() (in module mesh.patch) do_output() (simulation_null.NullSimulation method) do_tests() (in module test) doit() (in module examples.multigrid.mg_vis) (in module examples.multigrid.project_periodic) (in module examples.multigrid.prolong_restrict_demo) dovis() (advection.simulation.Simulation method) (advection_nonuniform.simulation.Simulation method) (compressible.simulation.Simulation method) (compressible_react.simulation.Simulation method) (diffusion.simulation.Simulation method) (incompressible.simulation.Simulation method) (lm_atm.simulation.Simulation method) (simulation_null.NullSimulation method) (swe.simulation.Simulation method)

E

EdgeCoeffs (class in multigrid.edge_coeffs) end() (util.profile.Timer method) enforce_particle_boundaries() (particles.particles.Particles method) evolve() (advection.simulation.Simulation method) (advection_nonuniform.simulation.Simulation method) (advection_rk.simulation.Simulation method) (advection_weno.simulation.Simulation method) (compressible.simulation.Simulation method) (compressible_fv4.simulation.Simulation method) (compressible_react.simulation.Simulation method) (compressible_rk.simulation.Simulation method) (compressible_sdc.simulation.Simulation method) (diffusion.simulation.Simulation method) (incompressible.simulation.Simulation method) (lm_atm.simulation.Simulation method) (simulation_null.NullSimulation method) (swe.simulation.Simulation method) examples module examples.multigrid module examples.multigrid.mg_test_general_alphabeta_only module

examples.multigrid.mg_test_general_beta_only module examples.multigrid.mg_test_general_constant module examples.multigrid.mg_test_general_dirichlet module examples.multigrid.mg_test_general_inhomogeneous module examples.multigrid.mg_test_simple module examples.multigrid.mg_test_vc_constant module examples.multigrid.mg_test_vc_dirichlet module examples.multigrid.mg_test_vc_periodic module examples.multigrid.mg_vis module examples.multigrid.project_periodic module examples.multigrid.prolong_restrict_demo module

F

f() (in module examples.multigrid.mg_test_general_alphabeta_only) (in module examples.multigrid.mg_test_general_beta_only) (in module examples.multigrid.mg_test_general_constant) (in module examples.multigrid.mg_test_general_dirichlet) (in module examples.multigrid.mg_test_general_inhomogeneous) (in module examples.multigrid.mg_test_simple) (in module examples.multigrid.mg_test_vc_constant) (in module examples.multigrid.mg_test_vc_dirichlet) (in module examples.multigrid.mg_test_vc_periodic) (in module examples.multigrid.mg_vis) FaceCenterData2d (class in mesh.patch) fail() (in module util.msg) fill_BC() (mesh.patch.CellCenterData2d method) (mesh.patch.FaceCenterData2d method) fill_BC_all() (mesh.patch.CellCenterData2d method) fill_ghost() (mesh.array_indexer.ArrayIndexer method) finalize() (in module advection.problems.smooth) (in module advection.problems.test) (in module advection.problems.tophat) (in module advection_fv4.problems.smooth) (in module advection_nonuniform.problems.slotted) (in module compressible.problems.acoustic_pulse) (in module compressible.problems.advect) (in module compressible.problems.bubble) (in module compressible.problems.hse) (in module compressible.problems.kh) (in module compressible.problems.logo) (in module compressible.problems.quad) (in module compressible.problems.ramp) (in module compressible.problems.rt) (in module compressible.problems.rt2) (in module compressible.problems.sedov) (in module compressible.problems.sod) (in module compressible.problems.test) (in module compressible_fv4.problems.acoustic_pulse) (in module compressible_react.problems.flame) (in module compressible_react.problems.rt) (in module diffusion.problems.gaussian) (in module diffusion.problems.test) (in module incompressible.problems.converge) (in module incompressible.problems.shear) (in module lm_atm.problems.bubble) (in module swe.problems.acoustic_pulse) (in module swe.problems.advect) (in module swe.problems.dam) (in module swe.problems.kh) (in module swe.problems.logo) (in module swe.problems.quad) (in module swe.problems.test) (simulation_null.NullSimulation method)

fine_like() (mesh.patch.Grid2d method) finished() (simulation_null.NullSimulation method) flatten() (in module mesh.reconstruction) flatten_multid() (in module mesh.reconstruction) flux_cons() (in module compressible_fv4.fluxes) fluxes() (in module advection_fv4.fluxes) (in module advection_rk.fluxes) (in module advection_weno.fluxes) (in module compressible_fv4.fluxes) (in module compressible_rk.fluxes) from_centers() (mesh.fv.FV2d method) FV2d (class in mesh.fv) fvs() (in module advection_weno.fluxes)

G

gamma_x() (in module examples.multigrid.mg_test_general_alphabeta_only) (in module examples.multigrid.mg_test_general_beta_only) (in module examples.multigrid.mg_test_general_constant) (in module examples.multigrid.mg_test_general_dirichlet) (in module examples.multigrid.mg_test_general_inhomogeneous) gamma_y() (in module examples.multigrid.mg_test_general_alphabeta_only) (in module examples.multigrid.mg_test_general_beta_only) (in module examples.multigrid.mg_test_general_constant) (in module examples.multigrid.mg_test_general_dirichlet) (in module examples.multigrid.mg_test_general_inhomogeneous) GeneralMG2d (class in multigrid.general_MG) get_args() (in module plot) get_aux() (mesh.patch.CellCenterData2d method) get_init_positions() (particles.particles.Particles method) get_interface_states() (in module incompressible.incomp_interface) (in module lm_atm.LM_atm_interface)

get_param() (util.runparams.RuntimeParameters method) get_positions() (particles.particles.Particles method) get_solution() (multigrid.MG.CellCenterMG2d method) get_solution_gradient() (multigrid.MG.CellCenterMG2d method) get_solution_object() (multigrid.MG.CellCenterMG2d method) get_stage_start() (mesh.integration.RKIntegrator method) get_var() (mesh.patch.CellCenterData2d method) (pyro.Pyro method) get_var_by_index() (mesh.patch.CellCenterData2d method) get_vars() (mesh.patch.CellCenterData2d method) Grid2d (class in mesh.patch) grid_generate_particles() (particles.particles.Particles method) grid_info() (multigrid.MG.CellCenterMG2d method) grid_setup() (in module simulation_null)

I

incompressible module incompressible.incomp_interface module incompressible.problems module incompressible.problems.converge module incompressible.problems.shear module incompressible.simulation module inflow_post_bc() (in module compressible.BC) inflow_pre_bc() (in module compressible.BC) init_data() (in module advection.problems.smooth) (in module advection.problems.test) (in module advection.problems.tophat) (in module advection_fv4.problems.smooth) (in module advection_nonuniform.problems.slotted) (in module compressible.problems.acoustic_pulse) (in module compressible.problems.advect) (in module compressible.problems.bubble) (in module compressible.problems.hse) (in module compressible.problems.kh) (in module compressible.problems.logo) (in module compressible.problems.quad) (in module compressible.problems.ramp) (in module compressible.problems.rt) (in module compressible.problems.rt2) (in module compressible.problems.sedov) (in module compressible.problems.sod) (in module compressible.problems.test) (in module compressible_fv4.problems.acoustic_pulse) (in module compressible_react.problems.flame) (in module compressible_react.problems.rt) (in module diffusion.problems.gaussian) (in module diffusion.problems.test) (in module incompressible.problems.converge) (in module incompressible.problems.shear) (in module lm_atm.problems.bubble) (in module swe.problems.acoustic_pulse) (in module swe.problems.advect) (in module swe.problems.dam) (in module swe.problems.kh) (in module swe.problems.logo) (in module swe.problems.quad) (in module swe.problems.test)

init_RHS() (multigrid.MG.CellCenterMG2d method) init_solution() (multigrid.MG.CellCenterMG2d method) init_zeros() (multigrid.MG.CellCenterMG2d method) initialize() (advection.simulation.Simulation method) (advection_fv4.simulation.Simulation method) (advection_nonuniform.simulation.Simulation method) (compressible.simulation.Simulation method) (compressible_fv4.simulation.Simulation method) (compressible_react.simulation.Simulation method) (diffusion.simulation.Simulation method) (incompressible.simulation.Simulation method) (lm_atm.simulation.Simulation method) (simulation_null.NullSimulation method) (swe.simulation.Simulation method) initialize_problem() (pyro.Pyro method) interpolate_velocity() (particles.particles.Particle method) ip() (mesh.array_indexer.ArrayIndexer method) ip_jp() (mesh.array_indexer.ArrayIndexer method) is_asymmetric() (in module lm_atm.LM_atm_interface) (mesh.array_indexer.ArrayIndexer method) is_asymmetric_pair() (in module lm_atm.LM_atm_interface) is_float() (in module util.runparams) is_int() (in module util.runparams) is_symmetric() (in module lm_atm.LM_atm_interface) (mesh.array_indexer.ArrayIndexer method) is_symmetric_pair() (in module lm_atm.LM_atm_interface)

J

jp() (lm_atm.simulation.Basestate method) (mesh.array_indexer.ArrayIndexer method)

L

lap() (mesh.array_indexer.ArrayIndexer method) limit() (in module mesh.reconstruction) limit2() (in module mesh.reconstruction) limit4() (in module mesh.reconstruction) lm_atm module lm_atm.LM_atm_interface module

lm_atm.problems module lm_atm.problems.bubble module lm_atm.simulation module load_params() (util.runparams.RuntimeParameters method)

M

mac_vels() (in module incompressible.incomp_interface) (in module lm_atm.LM_atm_interface) make_prime() (lm_atm.simulation.Simulation method) makeplot() (in module plot) max() (mesh.patch.CellCenterData2d method) mesh module mesh.array_indexer module mesh.boundary module mesh.fv module mesh.integration module mesh.patch module mesh.reconstruction module method_compute_timestep() (advection.simulation.Simulation method) (advection_nonuniform.simulation.Simulation method) (advection_rk.simulation.Simulation method) (advection_weno.simulation.Simulation method) (compressible.simulation.Simulation method) (compressible_rk.simulation.Simulation method) (diffusion.simulation.Simulation method) (incompressible.simulation.Simulation method) (lm_atm.simulation.Simulation method) (simulation_null.NullSimulation method) (swe.simulation.Simulation method) min() (mesh.patch.CellCenterData2d method) module advection advection.advective_fluxes advection.problems advection.problems.smooth advection.problems.test advection.problems.tophat advection.simulation advection_fv4 advection_fv4.fluxes advection_fv4.interface advection_fv4.problems advection_fv4.problems.smooth advection_fv4.simulation advection_nonuniform advection_nonuniform.advective_fluxes advection_nonuniform.problems advection_nonuniform.problems.slotted advection_nonuniform.simulation advection_rk advection_rk.fluxes advection_rk.simulation advection_weno advection_weno.fluxes advection_weno.simulation compare compressible compressible.BC compressible.derives compressible.eos compressible.interface compressible.problems compressible.problems.acoustic_pulse compressible.problems.advect compressible.problems.bubble compressible.problems.hse compressible.problems.kh compressible.problems.logo compressible.problems.quad compressible.problems.ramp compressible.problems.rt compressible.problems.rt2 compressible.problems.sedov compressible.problems.sod compressible.problems.test compressible.simulation compressible.unsplit_fluxes compressible_fv4 compressible_fv4.fluxes compressible_fv4.problems compressible_fv4.problems.acoustic_pulse compressible_fv4.simulation compressible_react compressible_react.problems compressible_react.problems.flame compressible_react.problems.rt compressible_react.simulation compressible_rk compressible_rk.fluxes compressible_rk.simulation compressible_sdc compressible_sdc.simulation diffusion diffusion.problems diffusion.problems.gaussian diffusion.problems.test diffusion.simulation examples examples.multigrid examples.multigrid.mg_test_general_alphabeta_only examples.multigrid.mg_test_general_beta_only examples.multigrid.mg_test_general_constant examples.multigrid.mg_test_general_dirichlet examples.multigrid.mg_test_general_inhomogeneous examples.multigrid.mg_test_simple examples.multigrid.mg_test_vc_constant examples.multigrid.mg_test_vc_dirichlet examples.multigrid.mg_test_vc_periodic examples.multigrid.mg_vis examples.multigrid.project_periodic examples.multigrid.prolong_restrict_demo incompressible incompressible.incomp_interface incompressible.problems incompressible.problems.converge incompressible.problems.shear incompressible.simulation lm_atm lm_atm.LM_atm_interface lm_atm.problems lm_atm.problems.bubble lm_atm.simulation mesh mesh.array_indexer mesh.boundary mesh.fv mesh.integration mesh.patch mesh.reconstruction multigrid multigrid.edge_coeffs multigrid.general_MG multigrid.MG multigrid.variable_coeff_MG particles particles.particles plot pyro simulation_null swe swe.derives swe.interface swe.problems swe.problems.acoustic_pulse swe.problems.advect swe.problems.dam swe.problems.kh swe.problems.logo swe.problems.quad swe.problems.test swe.simulation swe.unsplit_fluxes test util util.io util.msg util.plot_tools util.profile util.runparams

multigrid module multigrid.edge_coeffs module multigrid.general_MG module multigrid.MG module multigrid.variable_coeff_MG module

N

nolimit() (in module mesh.reconstruction) norm() (mesh.array_indexer.ArrayIndexer method)

nstages() (mesh.integration.RKIntegrator method) NullSimulation (class in simulation_null)

P

parse_args() (in module pyro) Particle (class in particles.particles) particles module Particles (class in particles.particles) particles.particles module phi_analytic() (in module diffusion.problems.gaussian) plot module pos() (particles.particles.Particle method) preevolve() (compressible_fv4.simulation.Simulation method) (incompressible.simulation.Simulation method) (lm_atm.simulation.Simulation method) (simulation_null.NullSimulation method)

pres() (in module compressible.eos) pretty_print() (mesh.array_indexer.ArrayIndexer method) (mesh.patch.CellCenterData2d method) prim_to_cons() (in module compressible.simulation) (in module swe.simulation) print_all_params() (util.runparams.RuntimeParameters method) print_paramfile() (util.runparams.RuntimeParameters method) print_sphinx_tables() (util.runparams.RuntimeParameters method) print_unused_params() (util.runparams.RuntimeParameters method) prolong() (mesh.patch.CellCenterData2d method) (mesh.patch.FaceCenterData2d method) pyro module Pyro (class in pyro) PyroBenchmark (class in pyro) PyroTest (class in test)

R

randomly_generate_particles() (particles.particles.Particles method) read() (in module util.io) read_bcs() (in module util.io) read_extras() (lm_atm.simulation.Simulation method) (simulation_null.NullSimulation method) register_var() (mesh.patch.CellCenterData2d method) report() (util.profile.TimerCollection method) restrict() (mesh.patch.CellCenterData2d method) (mesh.patch.FaceCenterData2d method) (multigrid.edge_coeffs.EdgeCoeffs method) rho_states() (in module lm_atm.LM_atm_interface) rhoe() (in module compressible.eos)

riemann() (in module incompressible.incomp_interface) (in module lm_atm.LM_atm_interface) riemann_and_upwind() (in module incompressible.incomp_interface) (in module lm_atm.LM_atm_interface) riemann_cgf() (in module compressible.interface) riemann_hllc() (in module compressible.interface) (in module swe.interface) riemann_prim() (in module compressible.interface) riemann_roe() (in module swe.interface) RKIntegrator (class in mesh.integration) run_sim() (pyro.Pyro method) (pyro.PyroBenchmark method) RuntimeParameters (class in util.runparams)

S

scratch_array() (mesh.patch.Grid2d method) sdc_integral() (compressible_sdc.simulation.Simulation method) set_aux() (mesh.patch.CellCenterData2d method) set_start() (mesh.integration.RKIntegrator method) setup_axes() (in module util.plot_tools) Simulation (class in advection.simulation) (class in advection_fv4.simulation) (class in advection_nonuniform.simulation) (class in advection_rk.simulation) (class in advection_weno.simulation) (class in compressible.simulation) (class in compressible_fv4.simulation) (class in compressible_react.simulation) (class in compressible_rk.simulation) (class in compressible_sdc.simulation) (class in diffusion.simulation) (class in incompressible.simulation) (class in lm_atm.simulation) (class in swe.simulation) simulation_null module single_step() (pyro.Pyro method) smooth() (multigrid.general_MG.GeneralMG2d method) (multigrid.MG.CellCenterMG2d method) (multigrid.variable_coeff_MG.VarCoeffCCMG2d method) solve() (multigrid.MG.CellCenterMG2d method) states() (in module advection_fv4.interface) (in module compressible.interface) (in module incompressible.incomp_interface) (in module lm_atm.LM_atm_interface) (in module swe.interface) states_nolimit() (in module advection_fv4.interface) store_as_benchmark() (pyro.PyroBenchmark method)

store_increment() (mesh.integration.RKIntegrator method) substep() (advection_fv4.simulation.Simulation method) (advection_rk.simulation.Simulation method) (advection_weno.simulation.Simulation method) (compressible_fv4.simulation.Simulation method) (compressible_rk.simulation.Simulation method) success() (in module util.msg) swe module swe.derives module swe.interface module swe.problems module swe.problems.acoustic_pulse module swe.problems.advect module swe.problems.dam module swe.problems.kh module swe.problems.logo module swe.problems.quad module swe.problems.test module swe.simulation module swe.unsplit_fluxes module

T

test module test_general_poisson_dirichlet() (in module examples.multigrid.mg_test_general_alphabeta_only) (in module examples.multigrid.mg_test_general_beta_only) (in module examples.multigrid.mg_test_general_constant) (in module examples.multigrid.mg_test_general_dirichlet) test_general_poisson_inhomogeneous() (in module examples.multigrid.mg_test_general_inhomogeneous) test_poisson_dirichlet() (in module examples.multigrid.mg_test_simple) test_vc_constant() (in module examples.multigrid.mg_test_vc_constant) test_vc_poisson_dirichlet() (in module examples.multigrid.mg_test_vc_dirichlet) test_vc_poisson_periodic() (in module examples.multigrid.mg_test_vc_periodic) Timer (class in util.profile)

timer() (util.profile.TimerCollection method) TimerCollection (class in util.profile) to_centers() (mesh.fv.FV2d method) true() (in module examples.multigrid.mg_test_general_alphabeta_only) (in module examples.multigrid.mg_test_general_beta_only) (in module examples.multigrid.mg_test_general_constant) (in module examples.multigrid.mg_test_general_dirichlet) (in module examples.multigrid.mg_test_general_inhomogeneous) (in module examples.multigrid.mg_test_simple) (in module examples.multigrid.mg_test_vc_constant) (in module examples.multigrid.mg_test_vc_dirichlet) (in module examples.multigrid.mg_test_vc_periodic) (in module examples.multigrid.mg_vis)

U

unsplit_fluxes() (in module advection.advective_fluxes) (in module advection_nonuniform.advective_fluxes) (in module compressible.unsplit_fluxes) (in module swe.unsplit_fluxes) update() (particles.particles.Particle method) update_particles() (particles.particles.Particles method) upwind() (in module incompressible.incomp_interface) (in module lm_atm.LM_atm_interface) user() (in module compressible.BC) util module

util.io module util.msg module util.plot_tools module util.profile module util.runparams module

V

v() (lm_atm.simulation.Basestate method) (mesh.array_indexer.ArrayIndexer method) v2d() (lm_atm.simulation.Basestate method) v2dp() (lm_atm.simulation.Basestate method)

v_cycle() (multigrid.MG.CellCenterMG2d method) VarCoeffCCMG2d (class in multigrid.variable_coeff_MG) Variables (class in compressible.simulation) (class in swe.simulation) velocity() (particles.particles.Particle method)

W

warning() (in module util.msg) well_balance() (in module mesh.reconstruction) weno() (in module mesh.reconstruction) weno_upwind() (in module mesh.reconstruction) write() (mesh.patch.CellCenterData2d method) (simulation_null.NullSimulation method)

write_data() (mesh.patch.CellCenterData2d method) (mesh.patch.FaceCenterData2d method) write_extras() (compressible.simulation.Simulation method) (lm_atm.simulation.Simulation method) (simulation_null.NullSimulation method) write_params() (util.runparams.RuntimeParameters method) write_particles() (particles.particles.Particles method)

X

xl_func() (in module examples.multigrid.mg_test_general_inhomogeneous)

Y

yl_func() (in module examples.multigrid.mg_test_general_inhomogeneous)

Z

zero() (mesh.patch.CellCenterData2d method)